淡江大學機構典藏:Item 987654321/100102
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    Please use this identifier to cite or link to this item: https://tkuir.lib.tku.edu.tw/dspace/handle/987654321/100102


    Title: Identification of Simple Sequence Repeat Biomarkers through Cross-Species Comparison in a Tag Cloud Representation
    Authors: Huang, Jhen-Li;Chang, Hao-Teng;Cheng, Ronshan;Hsu, Hui-Huang;Pai, Tun-Wen
    Contributors: 淡江大學資訊工程學系
    Date: 2014-03-31
    Issue Date: 2015-01-28 11:07:33 (UTC+8)
    Publisher: America: Hindawi Publishing Corporation
    Abstract: Simple sequence repeats (SSRs) are not only applied as genetic markers in evolutionary studies but they also play an important role in gene regulatory activities. Efficient identification of conserved and exclusive SSRs through cross-species comparison is helpful for understanding the evolutionary mechanisms and associations between specific gene groups and SSR motifs. In this paper, we developed an online cross-species comparative system and integrated it with a tag cloud visualization technique for identifying potential SSR biomarkers within fourteen frequently used model species. Ultraconserved or exclusive SSRs among cross-species orthologous genes could be effectively retrieved and displayed through a friendly interface design. Four different types of testing cases were applied to demonstrate and verify the retrieved SSR biomarker candidates. Through statistical analysis and enhanced tag cloud representation on defined functional related genes and cross-species clusters, the proposed system can correctly represent the patterns, loci, colors, and sizes of identified SSRs in accordance with gene functions, pattern qualities, and conserved characteristics among species.
    Relation: BioMed Research International 2014(2014), 678971(11pages)
    DOI: 10.1155/2014/678971
    Appears in Collections:[Graduate Institute & Department of Computer Science and Information Engineering] Journal Article

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